ETIOLOGY – PATHOGENESIS – IMMUNOLOGY
Adamo S, et al.
Signature of long-lived memory CD8+ T cells in acute SARS-CoV-2 infection
Nabel KG, et al.
Structural basis for continued antibody evasio n by the SARS-CoV-2 receptor binding domain
Li X, et al.
SARS-CoV-2 ORF10 suppresses the antiviral innate immune response by degrading MAVS through mitophagy
Cell MolImmunol., https://www.nature.com/articles/s41423-021-00807-4
Reynolds CJ, et al.
Heterologous infection and vaccination shapes immunity against SARS-CoV-2 variants
Le Wang et al
Coronavirus (SARS-CoV-2) causes lung inflammation and injury
ClinicalMicrobiology and Infection,https://www.clinicalmicrobiologyandinfection.com/article/S1198-743X(21)00674-1/fulltext
Sen K, et al.
Single-Cell Immunogenomic Approach Identified SARS-CoV-2 Protective Immune Signatures in Asymptomatic Direct Contacts of COVID-19 Cases
Front. Immunol. ,
https://www.frontiersin.org/articles/10.3389/fimmu.2021.733539/full?utm_source=F-NTF&utm_medium=EMLX&utm_campaign=PRD_FEOPS_20170000_ARTICLE
Yamaguchi T et al
ACE2-like carboxypeptidase B38-CAP protects from SARS-CoV-2-induced lung injury
Nature Communications, https://www.nature.com/articles/s41467-021-27097-8
Wei J,et al.
Anti-spike antibody response to natural SARS-CoV-2 infection in the general population
Nat Commun., https://www.nature.com/articles/s41467-021-26479-2
Hsieh WC,, et al.
NK cell receptor and ligand composition influences the clearance of SARS-CoV-2
J Clin Invest., https://www.jci.org/articles/view/146408
Kukla M et al
Anti-inflammatory adipokines: chemerin, vaspin, omentin concentrations and SARS-CoV-2 outcomes
Scientific Reports, https://www.nature.com/articles/s41598-021-00928-w.pdf
Kim DY et al.
Viral Kinetics of Severe Acute Respiratory Syndrome Coronavirus 2 in Patients with Coronavirus Disease 2019
Microbiol Spectr., https://journals.asm.org/doi/epub/10.1128/Spectrum.00793-21
Kim JM et al.
Viral Shedding among Re-Positive Severe Acute Respiratory Syndrome Coronavirus-2 Positive Individuals in Republic of Korea
Witkowski M, et al.
Untimely TGFβ responses in COVID-19 limit antiviral functions of NK cells
Bräuninger H, et al.
Cardiac SARS-CoV-2 infection is associated with pro-inflammatory transcriptomic alterations within the heart
Cardiovasc Res. , https://academic.oup.com/cardiovascres/advance-article/doi/10.1093/cvr/cvab322/6396864
Ravichandran S,e t al.
Systemic and mucosal immune profiling in asymptomatic and symptomatic SARS-CoV-2-infected individuals reveal unlinked immune signatures
Sci Adv., https://www.science.org/doi/10.1126/sciadv.abi6533?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
Konik M, et al.
Long-Term SARS-CoV-2 Specific Immunity Is Affected by the Severity of Initial COVID-19 and Patient Age
J Clin Med., https://www.mdpi.com/2077-0383/10/19/4606/htm
Liu N, Jiang C, et al.
Single-cell analysis of COVID-19, sepsis, and HIV infection reveals hyperinflammatory and immunosuppressive signatures in monocytes
https://www.cell.com/cell-reports/fulltext/S2211-1247(21)01253-5?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS2211124721012535%3Fshowall%3Dtrue
Ligotti ME, et al.
Immunopathology and Immunosenescence, the Immunological Key Words of Severe COVID-19. Is There a Role for Stem Cell Transplantation?
Frontiers in Cell Developmental Biology,https://www.frontiersin.org/articles/10.3389/fcell.2021.725606/full
Ward JD, et al.
Indeterminate QuantiFERON Gold Plus Results Reveal Deficient Interferon Gamma Responses in Severely Ill COVID-19 Patients
J Clin Microbiol.,https://journals.asm.org/doi/10.1128/JCM.00811-21?url_ver=Z39.882003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
Khan A, et al.
Virus-induced senescence is driver and therapeutic target in COVID-19.
Chang ES, et al.
New-onset IgG autoantibodies in hospitalized patients with COVID-19
Nature Communications, https://www.nature.com/articles/s41467-021-25509-3
Niessl J, et al.
Identification of resident memory CD8+ T cells with functional specificity for SARS-CoV-2 in unexposed oropharyngeal lymphoid tissue
Lili Ren et al
Dynamics of the Upper Respiratory Tract Microbiota and its Association with Mortality in COVID-19
American Journal of Respiratory and Critical Care Medicine, https://www.atsjournals.org/doi/pdf/10.1164/rccm.202103-0814OC
Holmes E.C. et al.
The origins of SARS-CoV-2: A critical review
COVID-19 Host genetic initiative
Mapping the human genetic architecture of COVID-19
Nature, July 2021; doi.org/10.1038/s41586-021-03767-x
Vanderbeke L et al
Monocyte-driven atypical cytokine storm and aberrant neutrophil activation as key mediators of COVID-19 disease severity
Nature, July 2021 ; DOI: 10.1038/s41467-021-24360-w
Breton G et al
Persistent Cellular Immunity to SARS-CoV-2 Infection
BioRXiv, April 2021 ; DOI: 10.1084/jem.20202515
Jung JH et al
SARS-CoV-2-specific T cell memory is sustained in COVID-19 convalescent patients for 10 months with successful development of stem cell-like memory T cells
Nature, June 2021; DOI: 10.1038/s41467-021-24377-1
Bloom JD
Recovery of deleted deep sequencing data sheds more light on the early Wuhan SARS-CoV-2 epidemic
bioRXiv – preprint, June 2021; doi.org/10.1101/2021.06.18.449051
Lei Y et al
SARS-CoV-2 Spike Protein Impairs Endothelial Function via Downregulation of ACE 2
Circulation, December 2020 ; DOI: 10.1101/2020.12.04.409144
Scheid JF et al
B cell genomics behind cross-neutralization of SARS-CoV-2 variants and SARS-CoV
Cell, june 2021; DOI: 10.1016/j.cell.2021.04.032
Zhou H et al
Identification of novel bat coronaviruses sheds light on the evolutionary origins of SARS-CoV-2 and related viruses
Cell, June 2021 ; doi.org/10.1016/j.cell.2021.06.008
Turner JS et al
SARS-CoV-2 infection induces long-lived bone marrow plasma cells in humans
Nature, May 2021; DOI: 10.21203/rs.3.rs-132821/v1
Liu Y et al
An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies
Cell, May 2021; doi.org/10.1016/j.cell.2021.05.032
Callaway E et al
Coronavirus variants get Greek names — but will scientists use them?
Nature , June 2021; doi.org/10.1038/d41586-021-01483-0
World Health Organization
Tracking SARS-CoV-2 variants
Low JS et al
Clonal analysis of immunodominance and cross-reactivity of the CD4 T cell response to SARS-CoV-2
Science, May 2021; DOI: 10.1126/science.abg8985
Series from The Lancet journals
COVID-19: Pathophysiology of Acute Disease
Osuchowski MF et al
The COVID-19 puzzle: deciphering pathophysiology and phenotypes of a new disease entity
The Lancet, May 2021; doi.org/10.1016/S2213-2600(21)00218-6
DeMerle K et al
Precision Medicine for COVID-19 Phenotype Anarchy or Promise Realized?
JAMA, May 2021; doi:10.1001/jama.2021.5248
Papayanni P et al
Vaccinated and convalescent donor-derived SARS-CoV-2-specific T cells as adoptive immunotherapy for high-risk COVID-19 patients
CID, April 2021; DOI: 10.1093/cid/ciab371
Ravindra NG et al
Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes
Plos One, March 2021 ; doi.org/10.1371/journal.pbio.3001143
Choe H et al
How SARS-CoV-2 first adapted in humans
Science, April 2021 ; DOI: 10.1126/science.abi4711
Riou C et al
Relationship of SARS-CoV-2-specific CD4 response to COVID-19 severity and impact of HIV-1 and Tuberculosis co-infection
The Journal of Clinical Investigation, May 2021; doi.org/10.1172/JCI149125
Ghai RR et al
Animal Reservoirs and Hosts for Emerging Alphacoronaviruses and Betacoronaviruses
Emerging Infectious Diseases, February 2021; DOI: 10.3201/eid2704.203945
Attaway AH et al
Severe covid-19 pneumonia: pathogenesis and clinical management
BMJ, March 2021; doi.org/10.1136/bmj.n436
Sokal A et al
Maturation and persistence of the anti-SARS-CoV-2 memory B cell response
Cell, February 2021; doi.org/10.1016/j.cell.2021.01.050
Schultze JL et al
COVID-19 and the human innate immune system
Combes AJ et al
Global absence and targeting of protectiveimmune states in severe COVID-19
Science, January 2021; doi.org/10.1038/s41586-021-03234-7
Gaebler C et al
Evolution of antibody immunity to SARS-CoV-2
Nature, January 2021 ; doi.org/10.1038/s41586-021-03207-w
EPIDEMIOLOGY
Lewis, H.C.; et al.
SARS-CoV-2 infection in Africa: A systematic review and meta-analysis of standardized seroprevalence studies, from January 2020 to December 2021
Medrxiv.org, https://www.medrxiv.org/content/10.1
Scozzari G et al.
Prevalence, Persistence, and Factors Associated with SARS-CoV-2 IgG Seropositivity in a Large Cohort of Healthcare Workers in a Tertiary Care University Hospital in Northern Italy
Baker MA et al.;
Rapid control of hospital-based SARS-CoV-2 Omicron clusters through daily testing and universal use of N95 respirators
Clinical Infectious Diseases,
Konig S. et al.;
A Comparative Analysis of In-Hospital Mortality per Disease Groups in Germany Before and During the COVID-19 Pandemic From 2016 to 2020
JAMA,
Chaguza C. et al.
NOT PEER REVIEWED
Rapid emergence of SARS-CoV-2 Omicron variant is associated with an infection advantage over Delta in vaccinated persons
medRxiv preprint
How well can Omicron evade immunity from COVID vaccines?
Murray CJL.
COVID-19 will continue but the end of the pandemic is near
Sood N et al.
Seroprevalence of Antibodies Specific to Receptor Binding Domain of SARS-CoV-2 and Vaccination Coverage Among Adults in Los Angeles County, April 2021: The LA Pandemic Surveillance Cohort Study
Henry NJ et al.
Variation in excess all-cause mortality by age, sex, and province during the first wave of the COVID-19 pandemic in Italy
Scientific Reports,
De Nadai et al.
The impact of control and mitigation strategies during the second wave of coronavirus infections in Spain and Italy
Nature Scientific Reports, https://www.nature.com/articles/s41598-022-05041-0
European Centre for Disease Prevention and Control
Guidance on quarantine of close contacts to COVID-19 cases and isolation of COVID-19 cases, in the current epidemiological situation, 7 January 2022
O. M. Manda S., et al.
A Spatial Analysis of COVID-19 in African Countries:Evaluating the Effects of Socio-Economic Vulnerabilitiesand Neighbouring